PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628594.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 323aa    MW: 36474.3 Da    PI: 6.794
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628594.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.16.4e-22135195259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqK+  g+++prsYY+C+++   +C+++k ++rs++dp v++it +g H+++
  XP_009628594.1 135 DDGYSWRKYGQKDTFGAKYPRSYYQCAHRykqNCEATKYIQRSDDDPYVFKITCKGYHTCK 195
                     8***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-23126196IPR003657WRKY domain
PROSITE profilePS5081119.657129192IPR003657WRKY domain
SuperFamilySSF1182901.57E-21132196IPR003657WRKY domain
SMARTSM007747.7E-28134196IPR003657WRKY domain
PfamPF031061.6E-20135195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDFSINPEYN SLINELTQGM EHTKQLRAYL RTVPSTSETT QEVLLQKIIY SYEQSLLILK  60
WSGSTPKSSL PLPPTIGAIE SPSFANGSPK SDDMKRSFIH HPELIDNSKR SKKSQPIWSE  120
EVRVSAESGS EGPIDDGYSW RKYGQKDTFG AKYPRSYYQC AHRYKQNCEA TKYIQRSDDD  180
PYVFKITCKG YHTCKQATTS VLQPTFSLTN RNQHFQNSHS DDKLIGDSFV SPTTHESNYF  240
SVSSNSQMNG FGIVHNLQHS ESYLSDTGIF LNLHHSDSDR TDIFSANTST TSSSVGAEFT  300
GLLGARFDFS IWTKTTNTLQ KDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628594.10.0PREDICTED: probable WRKY transcription factor 53 isoform X1
SwissprotQ9SUP64e-46WRK53_ARATH; Probable WRKY transcription factor 53
TrEMBLM1A5601e-103M1A560_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000149511e-102(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-44WRKY family protein